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   January - February 2014 Newsletter
Stopping heart disease before it starts

The motor protein, myosin, has fascinated BioFrontiers Chief Scientific Officer Leslie Leinwand for more than 25 years. This protein is responsible for making muscles contract in the body, but Leinwand, a professor in molecular, cellular and developmental biology, is interested in its function in one important muscle: the heart.

 

Myosin drives heart muscle contraction, and when this protein is mutated, it has devastating effects on the cardiovascular system. There are more than 300 known mutations in myosin, many of which cause a disease called hypertrophic cardiomyopathy. It is the most common genetic heart disease, occurring in 1 in 500 individuals, and is the leading cause of sudden death in young people.

 

In hypertrophic cardiomyopathy, the heart muscle becomes thickened in parts, forcing the heart to work overtime pumping blood throughout the body. Adults with this disease manage it by avoiding strenuous exercise and, in some cases, by using an implanted pacemaker. Even with those precautions, there is still the risk of sudden death.

 

Pediatric patients with myosin mutations can develop a more aggressive version of the disease and are left to rely on heart transplants to survive. Leinwand isn't satisfied with treatments for this disease in children and has co-founded a biotechnology company, MyoKardia, Inc., toward developing small molecule drugs that could have promise for treating myosin protein mutations before they lead to thickening of the heart muscle.

 

"We can get beyond just treating the symptoms," says Leinwand. "We have the potential to treat the root cause of this disease. If we can focus on preventing the heart muscles from thickening in the first place, we can get away from pacemakers and transplants."

BioFrontiers partners with Avery Brewing

In the basement of the Jennie Smoly Caruthers Biotechnology Building on CU-Boulder's East Campus sits a machine that can sequence roughly 6 billion DNA segments in about a week.

 

By comparison, human DNA consists of roughly 3 billion bases, and it took more than a decade for the first human genome to be sequenced by an international team of scientists.

 

The machine, an Illumnia HiSeq2000, is the centerpiece of the BioFrontiers Institute's Next-Gen Sequencing Facility, and it has become a critical piece of equipment for researchers across campus. But it's also an important resource for the Front Range's thriving biotech industry, which routinely relies on the facility for sequencing work.

 

The facility has partnered with all kinds of local biotech big hitters, including a company that makes biofuels and another that makes tests for genetic mutations. But in 2013, the Next-Gen Sequencing Facility forged a new relationship with a well-loved but less-obvious local biotech company: Boulder-based Avery Brewing. Read more

Recent papers by our faculty 

Structure of mediator of RhoA-dependent invasion (MRDI) explains its dual function as a metabolic enzyme and a mediator of cell invasion. 
(Biochemistry) - Natalie Ahn

A Quantitative Comparison of Human HT-1080 Fibrasarcoma Cells and Primary Human Dermal Fibroblasts Identifies a 3D Migration Mechanism with Properties Unique to the Transformed Phenotype. (PloS One) - Kristi Anseth and Natalie Ahn

Bioactive hydrogels: Lighting the way. (Nat Mater.) - Kristi Anseth

Clickable, Photodegradable Hydrogels to Dynamically Modulate Valvular Interstitial Cell Phenotype. (Adv Healthc Mater.) - Kristi Anseth

The role of valvular endothelial cell paracrine signaling and matrix elasticity on valvular interstitial cell activation. (Biomaterials) - Kristi Anseth

Body mass evolution and diversification within horses (family Equidae). (Ecol Lett) - Aaron Clauset

Comparison of the Vaginal Microbial Communities in Women with Recurrent Genital HSV Receiving Acyclovir Intravaginal Rings. (Antiviral Res.) - Rob Knight

Global biogeography of highly diverse protistan communities in soil. (ISME J.) - Rob Knight

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. (ISME J.) - Rob Knight

Toward effective probiotics for autism and other neurodevelopmental disorders. (Cell) - Rob Knight

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus). (ISME J.) - Rob Knight

Pregnancy as a cardiac stress model. (Cardiovasc Res.) - Leslie Leinwand

Approximation of sojourn-times via maximal couplings: motif frequency distributions (J. Math. Biol.) - Manuel Lladser
Our mission:
At the University of Colorado BioFrontiers Institute, researchers from the life sciences, physical sciences, computer science and engineering are working together to uncover new knowledge at the frontiers of science, and partnering with industry to make their discoveries relevant.
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UCSF-Mission Bay
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University of Washington
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CU-Boulder lab awarded $14.6 million DARPA contract   

The University of Colorado was recently awarded a cooperative agreement worth up to $14.6 million from the Defense Advanced Research Projects Agency (DARPA) to develop a new technological system to rapidly determine how drugs and biological or chemical agents affect human cells.

 

The project, called the Subcellular PanOmics for the Advanced Rapid Threat Assessment (SPARTA) will be conducted by an interdisciplinary CU-Boulder

 

 

team led by Research Assistant Professor William Old of the Department of Chemistry and Biochemistry.

 

The Jennie Smoly Caruthers Biotechnology Building houses seven mass spectrometers in the Proteomics and Mass Spectrometry Core Facility directed by Old. Under the DARPA contract, Old's facility will install to additional next-generation mass spectrometers at a cost of $2.2 million, which will also be used by scientists, students and local biotechnology companies who use the spectrometry facility.

 

SPARTA team members include Professor of Chemistry and Biochemistry and BioFrontiers Associate Director, Natalie Ahn; Associate Professor Michael Stowell of the Department of Molecular, Cellular and Developmental Biology; Professor Y.C. Lee of the Department of Mechanical Engineering; and Associate Professor Xuedong Liu of the Department of Chemistry and Biochemistry. The team also includes Associate Professor Nichole Reisdorph of the University of Colorado School of Medicine and National Jewish Health in Denver.
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